# Subset NIST NA12878 reference materials for use with exome datasets
# captured with Nimblegen's SeqCap EZ Human Exome Library v3
# http://www.nimblegen.com/exomev3launcheq/
---
dirs:
  rm: /home/chapmanb/tmp/nist/2013-04-27_v2.13
  genome: /home/chapmanb/tmp/biodata/genomes
rm:
  vcfs:
    - AllFDAdatasets_130403_allcall_UGHapMerge_Het_VQSRv2.13_all.vcf
    - AllFDAdatasets_130403_allcall_UGHapMerge_HomVar_VQSRv2.13_all.vcf
  interval: union11callableonlymerged_nouncert_addcert_excludesimplerep_excludesegdups_v2.13.bed
  ref: Hsapiens/GRCh37/seq/GRCh37.fa
subset:
  name: NA12878-nist-v2_13-NGv3
  interval: NGv3.bed