.. bcbio_nextgen documentation master file, created by
   sphinx-quickstart on Tue Jan  1 13:33:31 2013.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

bcbio-nextgen
=============

A python toolkit providing best-practice pipelines for fully automated
high throughput sequencing analysis.

Contents:

.. toctree::
   :maxdepth: 2
   
   contents/installation
   contents/testing
   contents/configuration
   contents/parallel
   contents/internals


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

