dir:
  discordant: /usr/local/projects/CLIA-Validation/secondary/qualbin/compare
  replicate: /usr/local/projects/CLIA-Validation/secondary/variants/work/ensemble/compare/gatk
  orig: /usr/local/projects/CLIA-Validation/secondary/qualbin/work/gatk
orig:
  std: 1_130209_qualbin-sort-dup-gatkrecal-realign-variants-combined-phased-effects.vcf
  prebin: 2_130209_qualbin-sort-dup-gatkrecal-realign-variants-combined-phased-effects.vcf
  allbin: 3_130209_qualbin-sort-dup-gatkrecal-realign-variants-combined-phased-effects.vcf
  
