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Loading required package: Biobase

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Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.80) loaded.  
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'


	The following object(s) are masked from package:stats :

	 model.response 


	The following object(s) are masked from package:base :

	 backsolve,
	 chol 


groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.

Building most specific GOs .....	( 3 GO terms found. )

Build GO DAG topology ..........	( 7 GO terms and 6 relations. )

Annotating nodes ...............	( 4 genes annotated to the GO terms. )

			 -- Classic Algorithm -- 

		 the algorithm is scoring 6 nontrivial nodes
		 parameters: 
			 test statistic:  fisher 
       GO.ID                                        Term Annotated Significant
1 GO:0042578         phosphoric ester hydrolase activity         2           2
2 GO:0016791                        phosphatase activity         1           1
3 GO:0003674                          molecular_function         4           2
4 GO:0003824                          catalytic activity         4           2
5 GO:0016787                          hydrolase activity         4           2
6 GO:0016788 hydrolase activity, acting on ester bond...         4           2
7 GO:0016298                             lipase activity         2           0
  Expected elimFisher
1      1.0       0.17
2      0.5       0.50
3      2.0       1.00
4      2.0       1.00
5      2.0       1.00
6      2.0       1.00
7      1.0       1.00
-> GO:0042578 (phosphoric ester hydrolase activity) : 0.1667
GeneA
GeneC
