#+title: Interoperable, collaborative multi-platform variant calling with bcbio
#+author: Brad Chapman \newline Bioinformatics Core, Harvard Chan School \newline https://bcb.io \newline http://j.mp/bcbiolinks
#+date: 22 July 2017

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* Talk

** 

#+BEGIN_CENTER
[[./images12/analysis_to_data.png]]
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** Why do we transfer data around?

\Large
- Lots of work to setup and configure an analysis
- Hard to port scalable analysis to new environment

** bcbio: community built analyses

#+ATTR_LATEX: :width 1.0\textwidth
[[./images3/bcbio_nextgen_highlevel.png]]

\vspace{1cm}
https://github.com/chapmanb/bcbio-nextgen

** Support the work you do

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[[./images9/bcbio_pipelines.png]]
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\scriptsize
https://bcbio-nextgen.readthedocs.org/en/latest/contents/pipelines.html

** Better abstractions = more interoperability

[[./images10/abstractions.png]]

\scriptsize
https://bcbio-nextgen.readthedocs.io/en/latest/contents/cwl.html

** Supported now

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[[./images12/bcbio_supported.png]]
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** In progress

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[[./images12/bcbio_inprogress.png]]
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** Bringing analysis to your data

\Large
- Community built analysis -- work together
- Interoperable workflows -- the right abstractions
- Platform support -- real practical progress

\vspace{0.5cm}
https://bcb.io \\
\vspace{0.5cm}
http://j.mp/bcbiolinks
